دانلود کتاب Brachypodium Genomics: Methods and Protocols

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Front Matter ....Pages i-xi
Methods for Cytogenetic Chromosome Barcoding and Chromosome Painting in Brachypodium distachyon and Its Relative Species (Dominika Idziak-Helmcke, Alexander Betekhtin)....Pages 1-19
Transcriptional and Posttranscriptional Regulation of Drought Stress Treatments in Brachypodium Leaves (Edoardo Bertolini, Mario Enrico Pè, Erica Mica)....Pages 21-29
Brachypodium distachyon Long Noncoding RNAs: Genome-Wide Identification and Expression Analysis (Concetta De Quattro, Erica Mica, Mario Enrico Pè, Edoardo Bertolini)....Pages 31-42
A Highly Efficient and Reproducible Fusarium spp. Inoculation Method for Brachypodium distachyon (Anuj Rana, Aneesh Karunakaran, Timothy L. Fitzgerald, Rosalie Sabburg, Elizabeth A. B. Aitken, Robert J. Henry et al.)....Pages 43-55
Tissue Culture (Somatic Embryogenesis)-Induced Tnt1 Retrotransposon-Based Mutagenesis in Brachypodium distachyon (Upinder S. Gill, Juan C. Serrani-Yarce, Hee-Kyung Lee, Kirankumar S. Mysore)....Pages 57-63
Methods for Xyloglucan Structure Analysis in Brachypodium distachyon (Lifeng Liu)....Pages 65-71
Genomic Approaches to Analyze Alternative Splicing, A Key Regulator of Transcriptome and Proteome Diversity in Brachypodium distachyon (Sonia Irigoyen, Renesh H. Bedre, Karen-Beth G. Scholthof, Kranthi K. Mandadi)....Pages 73-85
Information Resources for Functional Genomics Studies in Brachypodium distachyon (Keiichi Mochida, Kazuo Shinozaki)....Pages 87-99
Methods for Functional Transgenics: Development of Highly Efficient Transformation Protocol in Brachypodium and Its Suitability for Advancing Brachypodium Transgenics (Ron Vunsh)....Pages 101-117
Molecular Markers in Whole Genome Evolution of Brachypodium (Xin-Chun Mo, De-Quan Zhang, Can Kou, Ling-Juan Yin)....Pages 119-137
Estimate Codon Usage Bias Using Codon Usage Analyzer (CUA) (Zhenguo Zhang, Gaurav Sablok)....Pages 139-148
Identification of Pseudogenes in Brachypodium distachyon Chromosomes (Salvatore Camiolo, Andrea Porceddu)....Pages 149-171
TILLING in Brachypodium distachyon (Louise de Bang, Anna Maria Torp, Søren K. Rasmussen)....Pages 173-186
Method for the Large-Scale Identification of phasiRNAs in Brachypodium distachyon (Kun Yang, Xiaopeng Wen, Gaurav Sablok)....Pages 187-194
Evaluation of Genome-Wide Markers and Orthologous Markers in Brachypodium distachyon (Gaurav Sablok, Suresh B. Mudunuri, Korneliya Gudys, Kranthi Chennamsetti, G. P. Saradhi Varma, Miroslaw Kwasniewski)....Pages 195-201
Protocol for Coexpression Network Construction and Stress-Responsive Expression Analysis in Brachypodium (Sanchari Sircar, Nita Parekh, Gaurav Sablok)....Pages 203-221
Whole Genome DNA Methylation Analysis Using Next-Generation Sequencing (BS-seq) (I-Hsuan Lin)....Pages 223-287
Application of Tissue Culture and Transformation Techniques in Model Species Brachypodium distachyon (Bahar Sogutmaz Ozdemir, Hikmet Budak)....Pages 289-310
Back Matter ....Pages 311-312